Sunday, April 13, 2014

Mathematician+Physician=Hardy-Weinberg Equation


To expand on last week's lesson on evolution, this week in AP Biology we learned how to track evolution. There are a few things you have to know before you can actually track evolution though. One of them is a population, which is a local group of interbreeding individuals. Unlike, most previous ideas evolution does not occur through an individual, but a population. Another thing is a gene pool which is the collection of alleles in a population. To add on to that you need to know what allele frequency, which is how common the specific allele is in that population. A big thing to know is a slightly new and updated definition of evolution. Evolution can now be defined as a change in allele frequencies in a population. This leads us into how to measure evolution. 

To measure evolution you need to know the Hardy-Weinberg Equation, and to use this equation the population must be in Hardy-Weinberg Equilibrium. This means there must be a large population, no migration, no mutations, random mating, and no natural selection. Which is pretty much a nonexistent population. So, all of this is hypothetical.  Now to look at the Hardy-Weinberg Equation.
                                                               p+q=1
p= frequency of dominant allele
q= frequency of recessive allele
Both of the frequencies must add together to equal one. To find the frequency of homozygous dominant, heterozygous, and homozygous recessive you need to use this equation:
                                                            p2+2pq+q2=1
p2= the frequency of homozygous dominant
2pq= the frequency of heterozygous
q2= the frequency of homozygous recessive
These two equations serve as a null hypothesis to measure if forces are actually acting on a population. 




Tuesday, April 8, 2014

From the Ape to Humans... Evolution

This week in AP biology we went over evolution and learned that it's not really about ape to humans and all that. Evolution can be described as genetic changes in a population that happen over time. There are 8 mechanisms of evolution. 
The first one is natural selection. The first thing we think about natural selection is Charles Darwin , the Galápagos Islands, and only the strong survive. While the first two are correct, the third one is incorrect. Instead of only the strong survive it is the most adaptable survive. Three things are really important to natural selection. They are variation of genes in population, the variations to be heritable, and differential reproductive success. An example of natural selection would be a green caterpillar and a blue caterpillar on a green leaf the green caterpillar will blend in while the blue one will be easier for predators to spot. Therefore the green caterpillar will survive to reproduce more than the blue caterpillar will. 
Mutations or any change in the DNA is also a mechanism. Not all mutations are relevant to evolution. Only the mutations that will occur in gamete or sex cells can lead to evolution. 
The third mechanism is recombination. Recombination is mostly about crossing over that occurs during meiosis. The new gene combinations can be helpful and harmful to the organism. 
Gene Flow or migration is the fourth mechanism. Gene flow is one an organism leaves and takes their traits with them. When an organism leaves one population and goes to the other and reproduces their it takes its genes that the population had not been introduced to yet and includes them in the gene pool of the population. 
Genetic drift is chance changes in a population. It is entirely random and doesn't necessarily lead to the best or most adaptable organisms surviving. 
Artificial selection is the sixth mechanism of evolution. It is called this because instead of the organism choosing who to mate with humans do. This is very common in livestock animals. Breeders breed the biggest and best animals to wi the shows. 
Non- Random mating or sexual selection is the fact that not all individuals have the same chance of mating. Not always a good thing as it can lead to organism being more visual sexual selection happens in peacocks, some birds, and flys. 
The last mechanism is reproductive isolation.  Reproductive isolation occurs when a species is separated and then become two different species. This happened on the Galápagos Islands. Most cormorants are able to fly except for a type of cormorant that is found on the Galápagos Islands. 

Wednesday, March 26, 2014

The Terrorists of Cells

This week in AP Biology we went over viruses. Viruses are made of a protein coat called a capsid that encircles the middle which contains the genetic material and reverse transcriptase. Some viruses have a phospho-lipid bilayer called an envelope encircling them. In the envelope there are glycoproteins that are the key to the lock on plasma membranes. 
There are two different replication cycles min viruses. One is the lytic cycle this is when the cell is hijacked by the virus and uses the cell's machinery to synthesize more viruses. At the end of the cycle, the cell will burst setting the newly synthesized viruses loose. The other cycle is the lysogenic cycle. This is when the genetic material of the virus has been injected into the cell's DNA. Because the genetic material is in the cell'a DNA whenever the cell replicates the virus's genetic material is replicated too. The genetic material of the virus that is in the cell's DNA is called the prophage. The cell that has been affected by the virus can be in either one of these cycles depending on the circumstance. 
There are also viroids and prions. A viroid is a virus that affects plants. Prions are proteins that affect humans. Prions are associated with mad cow disease. 
Spikes are the glycoproteins. 

Monday, March 17, 2014

How to Make a Protein.

This week in AP Biology we reviewed transcription, RNA processing, and translation. These three processes are what enables helps DNA in the production of proteins. 
Transcription is the first of these processes. The enzyme RNA polymerase attaches to DNA, and starts adding nucleotides. Unlike DNA, in RNA strands adenine bonds with uracil instead of thymine. The strand of RNA then goes through RNA processing. During this process spicesomes cut out the introns in the RNA so that their is only extrinsic left. Next a 5' cap made of guanine is placed at the beginning of the strand and a poly A tail, A standing for adenine, is added to the end. These previous process all deal with mRNA and inside the nucleus. The next process takes place outside of the nucleus and deals with tRNA as well. 
Translation is the reading of mRNA and creating a protein made of amino acids. After RNA processing the smaller subunit of a ribosome will attach to mRNA and the larger subunit will follow. Next, the ribosome will read the mRNA and bring one amino acids per codon. These amino acids are brought by tRNA. The tRNA will dock at the docking site of a ribosome the amino acid it carries will form a peptide bond with amino acids that are already there, and then once getting rid of the amino acid it will leave the ribosome. Once the ribosome is finished with the mRNA the ribosome unattachs and the amino acid chain has formed a protein. From there it will either be used by the cell or a vesicle will transport it out of the cell. 
3-9-14

Sunday, March 2, 2014

DNA Clones and Suitcases




Last week in AP Biology we talked about DNA’s history this week we talked about how those discoveries would inspire future experiments. Once Watson and Crick discovered DNA’s structure the next question is, how does it replicate?
                DNA starts to separate at the origin of replication because of helicase. It then starts to create a replication bubble and fork. Next, single stranded proteins are added to the two parental strands to prevent them from reattaching. DNA polymerase III then starts to add nucleotides to the DNA. The polymerase adds the nucleotides in the direction of 5’ to 3’. Also, there is a leading strand and lagging strand during the replication process. The leading strand is replicated continuously, but the lagging strand is replicated in Okazaki fragments. Pieces of RNA mark the beginnings of the Okazaki fragments. Once pol III is done adding nucleotides pol I start to remove the RNA pieces and replacing them with pieces of DNA. DNA ligase then finishes it all up by connecting all the DNA fragments.

                Next we learned about how the DNA is packaged. In a mixture of DNA and histones we get nucleosomes which are looped in giant supercoils that created chromosomes. The histones have the ability to switch genes on and off and when the DNA spreads out it can be accessible for transcription. 

Sunday, February 23, 2014

DNA has a history????

This week in AP biology we covered the history of DNA. There are 11 prominent names that we associate with this subject. The first being T.H. Morgan who worked with fruit flies to find that chromosomes are located on genes. A second name is Freferick Griffith who was working to find a cure for pneumonia by working with Strepococcus pneumonia bacteria. Griffith discovered that there is a "Transforming Factor" that can turn harmless live bacteria into harmful bacteria when combined with heat-killed infectious bacteria. The next three names discovered just what that "Transforming Factor" was. In 1944 scientists Avery, McCarty, and MacLeod purified both proteins and DNA from Strepococcus pneumonia bacteria and injected both into bacteria. It turned out that when protein was injected into bacteria there was no effect, but when DNA was injected into bacteria it transformed the harmless bacteria into virulent bacteria. Hershey and Chase worked with bacteriophage to confirm that DNA was the "Transforming Factor." The next two names are very commonly associated with DNA having won a Novel Prize for their work with DNA. Watson and Crick are two men that discovered the double helix structure of DNA. A controversy surrounds this because it can be believed that they stole Rosalind Franklin's work.Meselson and Stahl worked with transcription, replication, and translation to try and guess where bands would be. These 11 names have forever changed the world because of their wonderful discoveries involving DNA. 

Friday, February 21, 2014

Chi Squared... and not its not the straightener.

This week in AP Biology we went over chi2 (sounds like ky). Chi2 is used to test a null hypothesis, in other words it can be used to see if there is a significant difference in what is observed and what is expected. The formula for chi squared is:
The X2c  represents chi2
The ∑ is a symbol for a summation.
Oi is the observed data, the data you have collected
Ei  is the expected data, what you would get in a perfect world.
To determine if the discrepancies between the numbers are to large you look at the critical value and degrees of freedom chart.
The chart gives you the number that your answer from the chi2 formula must be under for you to accept the null hypothesis.

Chi2 is commonly used in genetics to determine phenotypes.

Saturday, February 8, 2014

Genetic... chromosomes, chromosomes, and chromosomes!!!

This week in AP Biology we further travelled through genetics. We learned about sex-linked traits, co-dominance, incomplete dominance among other things. From there we went even deeper into the chromosomal basis of inheritance.
                Sex-linked traits are genes that are located on the x or y chromosome.  These genes on the chromosomes bring forth diseases such as hemophilia and color blindness. Co-dominance in genetics is when both alleles are expressed. This is exemplified in the blood type AB and calico cats. Calico cats are also always female which makes it a sex-linked trait. Incomplete dominance is when the dominant allele doesn’t completely mask the other such creating a sort of blending. This can be seen in blending a red and white snapdragon together and it producing a pink.
                The chromosomal basis of inheritance is connected with Thomas Hunt and the, Chromosome Theory of Inheritance which states that Mendelian genes have specific loci on chromosomes that undergo segregation and independent assortment. Thomas Hunt Morgan contributed a lot to his specific subject. He produced a lot of research with fruit flies that had to do with linked genes. Link genes are genes that tend to be inherited together because they are so close on the chromosomes.  He also helped with recombinant offspring. These are offspring that have features from both parents.
                We also looked at genetic disorders such as Huntington’s and Down Syndrome. The fertilization of these gametes cells that produce these disorders is called aneuploidy.

Monday, February 3, 2014

Genetics


This week for AP Biology we reviewed and studied genetics. On Tuesday we went to Sam Ryan's genetic conference at Lubbock High. At the conference we went over genetics and the recent discoveries in the field. 
An interesting thing I learned about was Barr bodies. Barr bodies are little black dots in female cells. They're only in females because the bodies are a disabled X chromosome. When a cell begins to form it randomly picks an X to follow and then disables the other one. This lead to questions about fixing Down syndrome by taking the third chromosome at 21 and disabling it so that it would turn into a Barr body. 


A fun fact I learned was that our phenotype which is the physical representation of our genotype is actually expressed in all of our cells.  
Another concept that I was enlightened about was that you can take skin cells and turn them into stem cells by reprogramming the cell. This can lead to many things. Such as growing new organs and allowing blind people to see again. The stem cells that have been reprogrammed can form new organs by using scaffolds of organs. If an organ cannot be replicated perfectly they use a dead organ and drain the cells out of it. The stem cells can also be used to replace corneas that have become too cloudy for people to see out of and thus making it possible for the replacement of their vision. This procedure has already been done in a young boy. The procedure requires no stiches or blood and the patient is under local anesthesia and last around thirty minutes. 


I also learned about alternative splicing which allows our genes to code for different proteins and telomerase. 
 Telomerase is an enzyme that builds up the telomeres which are caps at the end of chromosomes. Every time a cell divides the telomeres get shorter and shorter until eventually there is next nothing there. At that point the chromosome stops dividing, unless it has telomerase. The shortening of the telomeres is a major component in age. Unfortunately telomerase is only found in testis, ovaries, and cancer cells. If researchers can discover a way to put telomerase in all areas there might be a chance to postpone aging. 
 The Genetics Conference was super interesting and I advise everyone to take the opportunity to go to it if they can. 



Saturday, January 25, 2014

What time is it? LAB TIME!

 This week in AP Biology we did the mitosis and meiosis lab. As I previously discussed in my last blogs, mitosis which is when two genetically identical diploid daughter cells are produced and meiosis is the process which produces four genetically different haploid daughter cells. To began this lab we modeled mitosis and meiosis. We then prepared garlic for another activity. After following that we looked at onion root and fish egg cells to locate cells in the various stages of mitosis. We then proceeded to prepare the garlic root tip squash lab. In this part of the lab we took the garlic we had previously prepared by putting it into a sand and water mixture and placing it into a dark drawer, and cut off around 2 mm of the root tip. After that we put the root tip and hydrochloric acid on a slide  and passed it through an open flame for five seconds. Then we put a chemical that was bright pink and fuchsia in the name on the slide and passed it over an open flame for 2 minutes. We then squished the root tip and put it under a microscope to see if we could locate cells in the various stage of mitosis, but unfortunately we were unable to. That then concluded the lab.


(I will publish pictures separately.)

Saturday, January 18, 2014

Meiosis

 This week in AP Biology we went over meiosis. Meiosis is divided into 2 different parts, meiosis 1 and meiosis 2. Meiosis 2 is the most similar to mitosis. In meiosis 1 there are four stages prophase 1, metaphase 1, anaphase 1, and telophase 1. In prophase 1 chromosomes condense, homologous chromosomes attach, crossing over between chromosomes, and centrioles move to opposite ends. In metaphase 1 the tetras line up at the metaphase plate. During anaphase 1 the homologous chromosomes are separated and taken to opposite poles. After anaphase 1, telophase occurs and the sister chromosomes continued to be pulled. Cytokinesis then takes place. After that meiosis 2 takes place which is very similar to mitosis. 

 Mitosis and meiosis differ greatly in their end products; mitosis results in 2 genetically identical diploid cell and meiosis results in 4 genetically different haploid cells. 

Saturday, January 11, 2014

Message Passing and Reproducing in Cells

 This week in AP Biology we reviewed cell to cell communication and the cell cycle. 
 There are three types of cell to cell communication no distance, short distance, and long distance. In no distance communication the cells are touching and can send messages to one another. Plants have holes in there cell wall that allows the message to pass. When there is a short distance in cell to cell communication a local regulator is used to pass on the message, neurotransmitters are an example. When there is a long distance to pass on a message a hormone is used. The hormone is sent all around but only passes the message on to the right cells. 

After we went over cell to cell communication we then went to the cell cycle. The cell cycle is made up of the G1 phase, S phase, G2 phase, mitosis, and cytokinesis. There is also a G0 phase that some cells go into. G1, S, and G2 phase all make up interphase. In G1 phase the cell is working normally as the cell progresses into G2 it starts copying its DNA. When the cell starts S phase it again goes through its normal process. Then the cell gets to mitosis.  When mitosis and cytokinesis are combined it is called the mitosis (m) cycle the first phase is prophase. In prophase the chromatin becomes more clear and thicker and the centrioles become visible. Metaphase follows prophase in which the chromatin which has turned into sister chromatids are lined up in the middle of the cells with the centrioles at opposite ends and the mitotic spindle is forming. Anaphase which is the third phase is when the sister chromatids are pulled apart by kinectchores and nonkinectchores elongate the cell. The fourth and finall stage of mitosis (m) cycle is telophase and cytokinesis which is when the nucleus splits apart and start to reform the nuclear wall. And the cytoplasm splits thus creating another cell identical to its self. 
 To help control mitosis and prevent uncontrollable division there are checkpoints that the cell must pass before it can proceed into different phases. The are also internal and external  mechanisms that help to control uncontrollable division which can lead to cancer. 

Saturday, December 14, 2013

Lab Time!!!

This week in AP Biology we did a photosynthesis lab. The first portion of out lab tested the different pigments in spinach leaves. The next portion of our lab tested the rate of photosynthesis in spinach leaves. 
The first lab where we tested for the different pigments showed four different pigments. There was chlorophyll a, chlorophyll b, xanthophyll, and carotene in the spinach leaves. We then tested for a constant that measured how far the chromatography solvent travelled divided by how far the pigment travelled. 
Part two of the lab tested the rate of photosynthesis in spinach leaves. At the first of the lab we took ten spinach leaf discs and put them in a syringe with a bicarbonate solution with dish soap. We them created a vacuum inside the syringe to compress the mesophyll cells so the leaf discs would sink. We then placed the discs into another bicarbonate solution. Every thirty seconds we checked for leaf discs that we're floating. This would mean the mesophyll cells had  air in them and that photosynthesis was occurring. 

Saturday, December 7, 2013

The Food-Making Plant Process


               


 This week in AP Bio we went over Photosynthesis. Photosynthesis is an anabolic and endergonic process that plants use to produce food (glucose). The process is done in two reactions, the light reaction and the Calvin Cycle. The chemical equation of this process is:
6 CO2 + 6 H2O à C6H12O6 + 6O2
                The first reaction in Photosynthesis is the light reactions. In this reaction solar energy is converted into chemical energy in the thylakoid membrane. This starts with water being split, and because of this it provides a source of electrons and protons and gives off O2 as a by-product. Light is then absorbed by chlorophyll which excites the electrons in a domino effect until finally the electrons are accepted by the primary electron acceptor. All of this takes place in photosystem two. The electrons are then passed via electron transport chain to photosystem one. The fall of the electrons to a lower energy level provides enough energy for the synthesis of ATP. As the electrons do through part of the electron transport chain a proton gradient of H+ is produced and which is often used in chemiosmosis. Light energy meanwhile is transferred by light harvesting complexes and is used to excite electrons in photosystem one until they are accepted by the primary electron transport. The electrons in photosystem’s one primary electron acceptor are then transferred through redox reactions to another electron transport chain, although this one does not produce a proton gradient. The electrons are then transferred to NADPH.


                The second reaction in Photosynthesis is the Calvin Cycle. The Calvin Cycle performs carbon fixation where it takes CO2 from the air and it to the enzyme RuBP. Then through a series of reactions the ATP and NADPH produced by the light reactions are used up and recycled back. After all these reactions a sugar called G3P is produced which eventually is used to make glucose.

                 







Monday, November 25, 2013

FINALLY!!!

This week in AP Biology we reran our cellular respiration lab. We had tried to run it last week but unfortunately the lab went wrong. To begin the lab again we put the peas in water so they would germinate. Then, to prevent our lab going wrong from last time we hot glued the respirameters to the rubber cork they were supposed to be attached to. The next day in AP Biology we prepared for the lab even more. In the bottom of each test tube we placed a cotton ball and then put 1 mL of KOH solution on them. After that we placed a rayon ball which is considered a nonabsorbent cotton ball on top of them. The KOH solution attaches to the CO2 released in cellular respiration that way in the experiment you are only measuring the amount of oxygen consumed. We finally ran our lab the next day after putting 10 germinating peas in test tubes 1 and 4 and then putting dry peas and beads of equal volume in test tubes 2 and 5 and glass beads of equal volume in test tubes 3 and 6. We placed the repirameters on top of the test tubes and put them in water baths of 10 and 25 degrees Celsius. After a five minute resting period we began to take measure on the respirameters of the amount of data consumed. Unfortunately our data was very irregular and did not make sense. We attributed this to the fact that we moved the test tubes while they were in the water baths which caused the red dye at the top of the respirameters to leak out. In the end though the germinating peas consumed the most oxygen in the 25 degree Celsius water bath. The colder temperatures affected the peas because it slowed down the process of cellular respiration. 

Saturday, November 16, 2013

Oops!!!

This week in AP Biology we attempted to do two labs. Our first lab involved enzymes. In this lab we used hydrogen peroxide as a substrate and the enzyme in this lab would be peroxidase, an enzyme that is found in potatoes. In this lab we would dilute the hydrogen peroxide with water and add blended potato and water. When putting the two substances together the peroxidase in the potato would catalyze hydrogen peroxide into water and oxygen. We were going to see the rate of reaction of this catabolic reaction in different pHs, but unfortunately we prepared our different pH solutions too early and they began to mold. We now have to make more solutions of different pH and then we will be able to perform the lab. Our second lab dealt with cellular respiration. In this lab we were going to compare the amount of air produced by germinating peas, non-germinating peas and glass beads, and glass beads. We had six vials that we numbered one through six. In vial one we placed ten germinating peas. In vial two we put 10 non-germinating peas and a certain number of glass beads that made the volume of the germinating peas and non-germinating equal. In vial three we put only glass beads that equaled the volume of the germinating peas. We repeated this in vials four through six. After this was finished we placed vials one through three in a room temperature water bath and four through six in cool (10⁰C) water bath. The lab was not successful because the vials had repirometers on top of them and when the vials fell into the water the repirometers did also which screwed up the lab. This upcoming week in AP Biology we will restart the cellular respiration lab and will soon restart the enzyme lab.

                                      

Sunday, November 10, 2013

The Rehash of Cellular Respiration

This week in AP Biology we expanded even more on the catabolic process that is cellular respiration. Cellular respiration can be broken down into three smaller processes. These processes are glycolysis, Citric Acid or Krebs’s Cycle, and Oxidative phosphorylation which is made up of the electron transport chain and chemiosmosis.
The first reaction that occurs is glycolysis in the cytoplasm in this reaction glucose is broken down from a six carbon molecule into two three carbon molecules called pyruvate if oxygen is present. The result of this is four molecules of ATP although we had to use two molecules of ATP to start giving us a net profit of two ATPs and two molecules NADH or FADH2. If the process has to occur anaerobically rather than aerobically the glucose molecule is still broken down and the ATP is till produced, but lactic acid fermentation and alcohol fermentation may occur. In muscle cells when the muscle needs more energy than cellular respiration is giving out it performs lactic acid fermentation. When the glucose is broken down into pyruvate the pyruvate is then reduced by NADH and lactate is formed as a waste product.  The lactic acid builds up and can only be removed by exposure to oxygen. In certain prokaryotes and other anaerobic organisms alcohol fermentation is the source of energy. The pyruvate produced by glycolysis is changed into ethanol in alcohol fermentation.
After the glucose is broken down into two pyruvates the pyruvates must then be converted to acetyl CoA and diffuse across the mitochondria membrane before it can enter the Citric Acid Cycle. After the pyruvates are changed into acetyl CoA they enter the Citric Acid Cycle. The Citric Acid Cycle ends up reeasing the original six carbon atoms that were part of glycolysis at the begging as well as 3 NADH, 1 FADH2, and 1 ATP for every turn. Since there are 2 acetyl CoAs the cycle has two turns giving it at the end 4NADH, 2 FADH2, and 2 ATPs.
The energy held in the NADH and FADH2 electron carriers is then used by the electron transport system. Unlike glycolysis and the Citric Acid Cycle which produces ATP through substrate level phosphorylation the electron transport chain and chemiosmosis produce ATP through oxidative phosphorylation. The electron carriers then deposit electrons to the electron transport chain. The loss of energy from the electrons is used to pump protons across the mitochondria’s inner membrane. Once the electrons are done they then combine with two hydrogen ions and oxygen to form water. The large concentration of protons or H+ ions then power the enzyme ATP synthase which starts pumping out ATP. This part of the process is called chemiosmosis. The end result of this can produce up to 26 or 28 ATPs.


Monday, November 4, 2013

Cellular Respiration

This week in AP Biology we learned about Cellular Respiration. Cellular Respiration is the process of taking food with 02 and creating ATP. Cellular Respiration takes place in and outside of the mitochondria. It can be performed both aerobically and anaerobically although, it is more productive aerobically. The equation for cellular respiration is C6H12O6+6O6 à 6CO2+6H2O.
There are three steps in cellular respiration they are glycolysis, The Krebs’s Cycle, and the electron transport chain. Glycolysis is taking glucose and breaking it down into two pyruvates. It occurs outside of the mitochondria in the cytoplasm. This produces two ATPs. After glycolysis the pyruvates are diffused across the mitochondria’s membrane where it is changed to acetyl CoA. From there the acetyl CoA enters the Krebs’s or citric acid cycle. This process produces 6 NADH, 2 FADH2, and 2 ATPs. After the Krebs’s Cycle the NADH and FADH2 go to the electron transport chain. There the NADH and FADH2 release hydrogen atoms across the mitochondria’s membrane. When the outside of the mitochondria is saturated with hydrogen atoms it propels the enzyme ATP synthase to start producing ATP and it can produce up to thirty-four ATPs.

If cellular respiration occurs anaerobically it does not produce as much ATPs. Anaerobic respiration only has one step which is glycolysis. Lactic Acid Fermentation happens when muscle cells are placed under extreme pressure. The muscles cannot get enough oxygen so they start to perform cellular respiration anaerobically. This builds lactic acid in the cells and it can only go away by getting oxygen to the cells. When cellular respiration is performed anaerobically it is not as successful as when performed aerobically.

Saturday, October 19, 2013

The O word!

This week in AP Biology we did a lab over osmosis. Last week we learned osmosis is a type of diffusion, but it only applies to water. The definition of osmosis is the diffusion of water across a selectively permeable membrane.

There are three terms often mentioned when dealing with osmosis and they are hypertonic, hypotonic, and isotonic. Hypertonic is the solution when comparing two solutions has the higher concentration gradient. When cells are placed in hypertonic solutions the water in the cell will rush out of the cell, and the cell will start to shrivel up. In plants this causes plasmolysis, which is when the plasma membrane detaches from the cell wall. Salt water is hypertonic to the cell in our bodies, so if you are ever dehydrated salt water will not hydrate you but will dehydrate you faster.  A hypotonic solution is the solution when comparing two solutions has the lower gradient concentration. Cell placed in a hypotonic solution will most likely bust because the water rushes into the cell because of osmosis, except in plant cells. The cells in plants like to be in a hypotonic solution because it keeps the cell turgid. An isotonic solution is when comparing two solutions and them having the same concentration gradient. This is how people want their cells to be at most times. In plant cells though, this is not the prime environment for the cells. Plant cells in an isotonic solution become flaccid which causes the plant to look wilted. 
 The lab we did was centered around these terms and how the solutions affect cells.

Tuesday, October 15, 2013

The Gatekeeper

  This week in AP Bio we learned about the gatekeeper of the cell. This guardian of the cell is called the plasma membrane. The plasma membrane is made of a phospho-lipid bi-layer and proteins. The phospho head of the bi-layer is hydrophillic, while the lipid tail is hydrophobic this characteristic of  is called amphipathic. The along with proteins embedded in membrane allows the cell to be selectively permeable. The function of the plasma membrane is to maintain homeostasis by controlling what goes in and out of the cell.
  There is two different ways the plasma membrane diffuses what goes in and out of the cell. One is passive transport that requires no energy; there is two types of passive transport diffusion and facilitated diffusion. Diffusion is when molecules move from a high concentration gradient to a low concentration gradient. Osmosis is also diffusion, but it is when water diffuses across the plasma membrane. Facilitated Diffusion is when molecules move from an are of high concentration to an area of low transportation using a transport protein. The other type of transport that the plasma membrane uses is active transport, and it does require energy. The molecules are moving from an area of low concentration to high concentration, and the cell uses energy from the mitochondria called ATP.
  When cells require to move large particles into or out of the cells they use endocytosis ans exocytosis. Endocytosis is when when the membrane is taking the particles into the cell by vesicles created by the membrane. Once the particles are taken to their destination the membrane is reabsorbed by the cell. There are three types of endocytosis. Phagocytosis although it is also called cell eating; it is when the vacuole or vesicle the material is contained in is sent to the lysosomes to be digestive. In pinocytosis, when the plasma membrane engulfs the materials is also takes in the extracellular fluid this is very important in red blood cells. The third type of endocytosis is receptor-mediator endocytosis it is when the cell binds itself to specific particles. Exocytosis is used when the cell is moving molecules out of the cell. The large particle exiting the cell is enveloped by a vesicle that is fused with the membrane once it's materials exit.
  Each of our cells have a surrounding plasma membrane, even prokaryote cells have one. Is is very crucial to all organisms in maintaining homeostasis.